poli.objective_repository.rmf_landscape.register

Implements a (tunable) fitness landscape of the type RMF [1] for NA [1], AA [2] inputs.

References

[1] Adaptation in Tunably Rugged Fitness Landscapes: The Rough Mount Fuji Model.

Neidhart J., Szendro I.G., and Krug, J. Genetics 198, 699-721 (2014). https://doi.org/10.1534/genetics.114.167668

[2] Analysis of a local fitness landscape with a model of the rough Mt. Fuji-type landscape: Application to prolyl endopeptidase and thermolysin.

Aita T., Uchiyama H., et al. Biopolymers 54, 64-79 (2000). https://doi.org/10.1002/(SICI)1097-0282(200007)54:1<64::AID-BIP70>3.0.CO;2-R

Classes

RMFBlackBox(wildtype[, wt_val, c, kappa, ...])	RMF Black Box implementation.
RMFProblemFactory()	Problem factory for the rough Mt Fuji model problem.