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poli.core.util.proteins.pdb_parsing.parse_pdb_as_structure

poli.core.util.proteins.pdb_parsing.parse_pdb_as_structure#

poli.core.util.proteins.pdb_parsing.parse_pdb_as_structure(path_to_pdb: Path, structure_name: str = 'pdb', verbose: bool = False) → Bio.PDB.Structure.Structure#

Parses the PDB file at the given path and returns the structure.

The parsing is done quietly by default, but you can set verbose=True to get some output.

Parameters

  • path_to_pdb (Path) – The path to the PDB file.

  • structure_name (str, optional) – The name of the structure (which is passed to the get_structure method of the PDBParser object). Defaults to “pdb”.

  • verbose (bool, optional) – If True, print the progress of the parsing. Defaults to False.

Returns

The parsed structure.

Return type

PDB.Structure.Structure