poli.objective_repository.gfp_cbas.abstract_vae_wrapper.AbstractVAEWrapper

class poli.objective_repository.gfp_cbas.abstract_vae_wrapper.AbstractVAEWrapper

__init__()

Methods

__init__()
decode(z[, grad])	Returns an NxLxAA tensor.
decode_samples_from_encoder(x, num_samples)	For a single one hot encoded LxAA vector this method samples around the encoded sequence and returns the decoded sequences.
encode(x)	Turns a one hot encoded LxAA vector into a continuous lower dimensional vector.
encode_sequences(seqs)
get_latent_dimensionality()
get_max_llh_sequence(proba)
get_wildtype_distribution()	Returns a distribution to represent the wild-type.
transform_sequences_to_atoms(x)	Turns a sequence into a Dirac distribution around the sequence. NO ZERO-HANDLING! :param x: a list of sequences encoded according to the problem alphabet :type x: :return: Returns an NxLxAA tensor. :rtype:.